PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010941240.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C3H
Protein Properties Length: 348aa    MW: 37980.9 Da    PI: 7.1973
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010941240.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.83.8e-0895120127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +kt+lC+ f++ GtC+y  +C+FaHg+
  XP_010941240.1  95 FKTKLCCKFRA-GTCPYITNCNFAHGM 120
                     69*********.*************95 PP

2zf-CCCH18.34.3e-06164189126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     yk + C+ f+    C+yGd+C+F H+
  XP_010941240.1 164 YKGRHCKKFYTEEGCPYGDTCTFLHD 189
                     78888********************7 PP

3zf-CCCH43.74.4e-14225250126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt++C+ +  tG+C++G++C+FaHg
  XP_010941240.1 225 WKTRICNKWEMTGYCPFGSKCHFAHG 250
                     8************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.0E-1492127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-892125IPR000571Zinc finger, CCCH-type
SMARTSM003560.001694120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.73794121IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-595120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-7162191IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-8163191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.742163191IPR000571Zinc finger, CCCH-type
SMARTSM003560.15163190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-17220254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.54E-10221255IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.657224252IPR000571Zinc finger, CCCH-type
SMARTSM003567.6E-9224251IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-11225250IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDYSSNAIEI IPEATGPEPW AQASSEQAIW ATEDDYRSWS GEPSADTVSN PAYGDRQSQS  60
QSRAGSEQPP SKKPRNSLEG NGSTSKSRAI GKMFFKTKLC CKFRAGTCPY ITNCNFAHGM  120
EELRKPPPNW QEIVAAQEGM EPREEHQIPI LTSSNLGGDG QRSYKGRHCK KFYTEEGCPY  180
GDTCTFLHDE QSKARESVAI SLSPTVGGSG YGGGSNGSSQ KPSNWKTRIC NKWEMTGYCP  240
FGSKCHFAHG TAELHRYGGG LVEMEGRDTP SVATDSKQAG ASTRAPTETV VASMTSVPHA  300
DVYHMGGPSQ RSTVVSQRQG LGQGQRLQKW KGPDKISRIY GDWIDESE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010941240.10.0PREDICTED: zinc finger CCCH domain-containing protein 56-like
SwissprotQ84UQ31e-149C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLF2EAY21e-167F2EAY2_HORVD; Predicted protein
STRINGBRADI3G16377.11e-163(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP66153853
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-111C3H family protein